#Imagej software download windows how to#
#Imagej software download windows install#
#Imagej software download windows code#
#Imagej software download windows series#

All analysis and processing functions are available at any magnification factor. Image can be zoomed up to 32:1 and down to 1:32. It does geometric transformations such as scaling, rotation and flips.

It supports standard image processing functions such as contrast manipulation, sharpening, smoothing, edge detection and median filtering. It can create density histograms and line profile plots. It can calculate area and pixel value statistics of user-defined selections. It is multithreaded, so time-consuming operations such as image file reading can be performed in parallel with other operations.

#Imagej software download windows series#

It supports 'stacks', a series of images that share a single window. It can read many image formats including TIFF, GIF, JPEG, BMP, DICOM, FITS and 'raw'. It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine. ImageJ is an intersting Java based image processing application inspired by NIH Image for the Macintosh. 7, July 2004, pp.Top Software Keywords Show more Show less NeuronJ also appears in the following paper on ImageJ: You may also want to cite a survey paper on neuron tracing:Д¬ytometry Part A, vol. UnserДesign and Validation of a Tool for Neurite Tracing and Analysis in Fluorescence Microscopy ImagesД¬ytometry Part A, vol. If you publish results based on NeuronJ, I expect you to cite the following paper, which describes the design and validation of the tool: The development of NeuronJ started while I was with the Biomedical Imaging Group and collaborating with researchers from the Laboratory of Cellular Neurobiology of the Swiss Federal Institute of Technology Lausanne in Switzerland, and was finished while I was with the Biomedical Imaging Group Rotterdam of Erasmus University Medical Center in the Netherlands. THE COPYRIGHT HOLDER HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. THE SOFTWARE AND CORRESPONDING DOCUMENTATION IS PROVIDED 'AS IS'. THE COPYRIGHT HOLDER SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE EXPRESS OR IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. IN NO EVENT SHALL THE COPYRIGHT HOLDER BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, OF ANY KIND WHATSOEVER, ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF ADVISED OF THE POSSIBILITY THEREOF. THE COPYRIGHT HOLDER IS FREE TO MAKE VERSIONS OF THE SOFTWARE AVAILABLE FOR A FEE OR COMMERCIALLY ONLY. IT IS NOT ALLOWED TO REDISTRIBUTE, SELL, OR LEASE THIS SOFTWARE, OR DERIVATIVE WORKS THEREOF, WITHOUT PERMISSION IN WRITING FROM THE COPYRIGHT HOLDER. Permission to use this software and corresponding documentation for educational, research, and not-for-profit purposes, without a fee and without a signed licensing agreement, is granted, subject to the following terms and conditions. Terms and ConditionsД¬opyright (C) 2004-2022 Erik Meijering. See the release notes for information on the present and past versions.

#Imagej software download windows how to#

See the online manual for information on how to use the plugin. To test the software use the image and tracings shown above. Information on the second file (the support library) is also available.

#Imagej software download windows code#

The source code of NeuronJ is available from GitHub. ImageJ users need to manually download the following two jar-files to the plugins folder.Д«y downloading any of these files you indicate your agreement to the Terms and Conditions below.

#Imagej software download windows install#

Download InformationДЇiji users only need to enable the ImageScience update site to install NeuronJ. More details on the underlying algorithms can be found in the paper referenced below. The plugin can handle only two-dimensional (2D) images of type 8-bit gray-scale or indexed color. NeuronJ is an ImageJ plugin to facilitate the tracing and quantification of elongated image structures. NeuronJ: An ImageJ Plugin for Neurite Tracing and Analysis